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Academic Foundation

Advancing Knowledge

My academic journey has provided the theoretical foundation for my practical work. From my earliest exploration of electronics engineering to my doctoral research in biomedical electronics and bioinformatics, I've sought knowledge that bridges disciplines and challenges conventional boundaries.

Education

Ph.D. Candidate
National Taiwan University

Biomedical Electronics and Bioinformatics

Dissertation:

Design and implementation of recurrent neural network models for function and structure prediction of protein sequences

Master of Science (M.S.)
National Taiwan University

Electronic Design Automation

Dissertation:

A Genetic Algorithm Approach to Combinatorial Optimization for Targeted Drug Combination Design and Microarray Feature Selection with Cluster Analysis

Bachelor of Science (B.S.)
National Chiao Tung University

Electronics Engineering

Activities:

Campus Computer Communication Association (CCCA), Student Association of Electronics Engineering, Mei-Chu Tournament Association

Additional Education
Udacity

Artificial Intelligence and Cybersecurity

Courses:

  • Ethical Hacker Nanodegree Program
  • Introduction to Artificial Intelligence (Andrew Ng)
  • Programming a Robotic Car (Sebastian Thrun)
  • Design of Computer Programs (Peter Norvig)

Publications

My research contributions span genomics, bioinformatics, and artificial intelligence, with publications in peer-reviewed journals and conference proceedings. These works reflect my commitment to advancing scientific knowledge and developing novel computational approaches to biological problems.

The GFF3toolkit: QC and Merge Pipeline for Genome Annotation

Chen, Mei-Ju May; Lin, Han; Chiang, Li-Mei; Childers, Christopher P; Poelchau, Monica F

Insect Genomics: Methods and Protocols: 75-87, 2019

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface

McKenna, Duane D.; Scully, Erin D.; Pauchet, Yannick; Hoover, Kelli; Kirsch, Roy; Geib, Scott M.; Mitchell, Robert F.; Waterhouse, Robert M.; Ahn, Seung-Joon; Arsala, Deanna; Benoit, Joshua B.; Blackmon, Heath; Bledsoe, Tiffany; Bowsher, Julia H.; Busch, André; Calla, Bernarda; Chao, Hsu; Childers, Anna K.; Childers, Christopher; Clarke, Dave J.; Cohen, Lorna; Demuth, Jeffery P.; Dinh, Huyen; Doddapaneni, HarshaVardhan; Dolan, Amanda; Duan, Jian J.; Dugan, Shannon; Friedrich, Markus; Glastad, Karl M.; Goodisman, Michael A. D.; Haddad, Stephanie; Han, Yi; Hughes, Daniel S. T.; Ioannidis, Panagiotis; Johnston, J. Spencer; Jones, Jeffery W.; Kuhn, Leslie A.; Lance, David R.; Lee, Chien-Yueh; Lee, Sandra L.; Lin, Han; Lynch, Jeremy A.; Moczek, Armin P.; Murali, Shwetha C.; Muzny, Donna M.; Nelson, David R.; Palli, Subba R.; Panfilio, Kristen A.; Pers, Dan; Poelchau, Monica F.; Quan, Honghu; Qu, Jiaxin; Ray, Ann M.; Rinehart, Joseph P.; Robertson, Hugh M.; Roehrdanz, Richard; Rosendale, Andrew J.; Shin, Seunggwan; Silva, Christian; Torson, Alex S.; Jentzsch, Iris M. Vargas; Werren, John H.; Worley, Kim C.; Yocum, George; Zdobnov, Evgeny M.; Gibbs, Richard A.; Richards, Stephen

Genome biology 17: 1-18, 2016

Unique features of a global human ectoparasite identified through sequencing of the bed bug genome

Benoit, Joshua B.; Adelman, Zach N.; Reinhardt, Klaus; Dolan, Amanda; Poelchau, Monica; Jennings, Emily C.; Szuter, Elise M.; Hagan, Richard W.; Gujar, Hemant; Shukla, Jayendra Nath; Zhu, Fang; Mohan, M.; Nelson, David R.; Rosendale, Andrew J.; Derst, Christian; Resnik, Valentina; Wernig, Sebastian; Menegazzi, Pamela; Wegener, Christian; Peschel, Nicolai; Hendershot, Jacob M.; Blenau, Wolfgang; Predel, Reinhard; Johnston, Paul R.; Ioannidis, Panagiotis; Waterhouse, Robert M.; Nauen, Ralf; Schorn, Corinna; Ott, Mark-Christoph; Maiwald, Frank; Johnston, J. Spencer; Gondhalekar, Ameya D.; Scharf, Michael E.; Peterson, Brittany F.; Raje, Kapil R.; Hottel, Benjamin A.; Armisén, David; Crumière, Antonin Jean Johan; Refki, Peter Nagui; Santos, Maria Emilia; Sghaier, Essia; Viala, Sèverine; Khila, Abderrahman; Ahn, Seung-Joon; Childers, Christopher; Lee, Chien-Yueh; Lin, Han; Hughes, Daniel S. T.; Duncan, Elizabeth J.; Murali, Shwetha C.; Qu, Jiaxin; Dugan, Shannon; Lee, Sandra L.; Chao, Hsu; Dinh, Huyen; Han, Yi; Doddapaneni, Harshavardhan; Worley, Kim C.; Muzny, Donna M.; Wheeler, David; Panfilio, Kristen A.; Vargas Jentzsch, Iris M.; Vargo, Edward L.; Booth, Warren; Friedrich, Markus; Weirauch, Matthew T.; Anderson, Michelle A. E.; Jones, Jeffery W.; Mittapalli, Omprakash; Zhao, Chaoyang; Zhou, Jing-Jiang; Evans, Jay D.; Attardo, Geoffrey M.; Robertson, Hugh M.; Zdobnov, Evgeny M.; Ribeiro, Jose M. C.; Gibbs, Richard A.; Werren, John H.; Palli, Subba R.; Schal, Coby; Richards, Stephen

Nature communications 7(1): 10165, 2016

The i5k Workspace@ NAL-enabling genomic data access, visualization and curation of arthropod genomes

Poelchau, Monica; Childers, Christopher; Moore, Gary; Tsavatapalli, Vijaya; Evans, Jay; Lee, Chien-Yueh; Lin, Han; Lin, Jun-Wei; Hackett, Kevin

Nucleic acids research 43(D1): D714-D719, 2015

Transcriptome alterations of mitochondrial and coagulation function in schizophrenia by cortical sequencing analysis

Huang, Kuo-Chuan; Yang, Ko-Chun; Lin, Han; Tsao, Theresa Tsun-Hui; Lee, Sheng-An

BMC genomics 15: 1-16, 2014

Genotyping of human neutrophil antigens (HNA) from whole genome sequencing data

Chu, Hsueh-Ting; Lin, Han; Tsao, Theresa Tsun-Hui; Chang, Chun-Fan; Hsiao, William WL; Yeh, Tze-Jung; Chang, Ching-Mao; Liu, Yen-Wenn; Wang, Tse-Yi; Yang, Ko-Chun

BMC Medical Genomics 6: 1-8, 2013

EBARDenovo: highly accurate de novo assembly of RNA-Seq with efficient chimera-detection

Chu, Hsueh-Ting; Hsiao, William WL; Chen, Jen-Chih; Yeh, Tze-Jung; Tsai, Mong-Hsun; Lin, Han; Liu, Yen-Wenn; Lee, Sheng-An; Chen, Chaur-Chin; Tsao, Theresa TH

Bioinformatics 29(8): 1004-1010, 2013